| Fuka mine | 13 |
| Tanohata mine | 7 |
| Iwagi islet | 4 |
| Mogurazawa mine | 4 |
| Ohmi, Itoigawa City | 4 |
| Unnamed manganese deposit, Shobu | 4 |
| Horoman mine, Horoman peridotite body | 3 |
| Gozaisho mine | 2 |
| Kasuga mine | 2 |
| Kawazu mine | 2 |
| Minamiboso | 2 |
| Minamichiyoda | 2 |
| Misato | 2 |
| Noda-Tamagawa mine | 2 |
| Sadamisaki Peninsula | 2 |
| Saiki | 2 |
| Shiromaru mine | 2 |
| Taguchi mine | 2 |
| Teine mine | 2 |
| Tomamae | 2 |
| Abu | 1 |
| Aibetsu | 1 |
| Hitachi mine | 1 |
| Ikuno Mine | 1 |
| Ise | 1 |
| Johkoku mine | 1 |
| Kameyama | 1 |
| Kamioka mine | 1 |
| Kawamata | 1 |
| Kiryū | 1 |
| Komono | 1 |
| Kunashir Island | 1 |
| Kōchi Prefecture | 1 |
| Mount Utsumine | 1 |
| Munakata | 1 |
| Nankoku | 1 |
| Osarizawa mine | 1 |
| Saijo | 1 |
| Shikaoi | 1 |
| Shikokuchūō-shi | 1 |
| Shōdo Island | 1 |
| Takase mine | 1 |
| Toyoha mine | 1 |
| Yugawara Onsen | 1 |